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cloning of beta hemolysin gene from coagulase-negative staphylococci and testing of biological activity

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dc.contributor.advisor BAŞBÜLBÜL, GAMZE
dc.contributor.author ALI, SAHD
dc.date.accessioned 2021-02-06T12:44:05Z
dc.date.available 2021-02-06T12:44:05Z
dc.date.issued 2021-02-06
dc.date.submitted 2021-01-07
dc.identifier.uri http://hdl.handle.net/11607/3977
dc.description.abstract Coagulase-negative staphylococci (CoNS) are differentiated from the closely related but more virulent Staphylococcus aureus by their inability to produce free plasma coagulase. Coagulase-negative staphylococci are common etiologies of bacteremia that are resulted from intravascular device infections. They now represent one of the major nosocomial pathogens in clinical microbiology laboratories with S. epidermidis and S. haemolyticus being the significant species. Beta hemolysin (hlb) serves as an important virulence molecule involved in the pathogenesis of S. epidermidis. This cytotoxin has two distinct mechanisms of action; Sphingomyelinase activity and DNA bio-film ligase activity (i.e. the ability of β-toxin to cross-link itself in the presence of exogenous DNA). In this study, strains of S. epidermidis cultured from foot infections from diabetic patients were used. Primers with attached KpnI and EcoRI restriction sites were designed to amplify the hlb gene. The gene was subjected to cloning using pUC19 plasmid as a vector. After cloning, the amplicon obtained by M13 PCR was sent for confirmation by sequencing. From the sequence result, a percentage similarity rate of 98.95% of (Staphylococcus epidermidis strain Q47 sphingomyeline phosphodiesterase) was confirmed as expected. The recombinant protein was tested on a sheep blood agar which showed hemolysis of erythrocytes. tr_TR
dc.description.sponsorship rekombinant DNA ve Rekombinant protein araştırma ve uygulama merkezi tr_TR
dc.description.tableofcontents ACCEPTANCE AND APPROVAL FORM ………………………………………………… İ ACKNOWLEDGEMENT ...................................................................................................... İİ TABLE OF CONTENTS ........................................................................................................ İİİ LIST OF ABBREVIATIONS .................................................................................................. Vİ LIST OF FIGURES ............................................................................................................... Vİİ LIST OF PICTURES ............................................................................................................ Vİİİ LIST OF TABLES .................................................................................................................. İX ÖZET ........................................................................................................................................ X ABSTRACT ............................................................................................................................ Xİ 1. INTRODUCTION 1 2. LITERATURE REVIEW 4 2.1. Classification of Coagulase-negative staphylococci (CoNS) 4 2.2. Staphylococcal virulence factors 11 2.2.1. Toxins 11 2.2.2. Leukotoxin 12 2.2.3. Panton-valentine leukocidin 12 2.3. Hemolysins 13 2.3.1. Alpha Hemolysin (Hla-Toxin) 13 2.3.2. Beta hemolysin (β- toxin) 14 2.4. Gamma hemolysin (γ- toxin) 17 2.5. Delta hemolysin (δ-toxin) 17 2.7. Pathogenecity of Staphylococcus epidermidis 19 2.7.1. Bio-film formation of Staphylococcus epidermidis 19 2.7.2. Staphylococcus epidermidis adhesive activity 20 2.7.3. Phenol Soluble Modulins (PSMs) 21 2.7.4. Antibiotic Resistance of Staphylococcus epidermidis 22 2.7.5. Host immune response to Staphylococcus epidermidis 22 3. MATERIAL AND METHOD 24 3.1. Materials 24 3.1.1. Bacteria strains 24 3.1.2. Media and Chemical solutions 24 3.2. Method 26 3.2.1. Bacterial DNA isolation 27 3.2.2. PCR primer sequence design 27 3.2.3. Polymerase chain reaction (PCR) setup 28 3.2.4. Electrophoresis 29 3.3. Cloning of beta hemolysin (hlb) gene 30 3.4. Preparation of competent cells 31 3.5. Transformation 31 3.6. Detection of gene by colony PCR 32 3.6.1. Plasmid DNA isolation 32 3.6.2. Biological activity testing of recombinant protein 33 3.6.3. Sequence Analysis 34 4. RESULTS 35 4.1. Propagation of S. epidermidis isolates 35 4.2. PCR amplification of beta hemolysin gene 36 4.3. Cloning of beta hemolysin gene 36 4.4. M13 colony PCR 37 4.5. Plasmid isolation from recombinant colonies 38 4.6. Observation of hemolysis and hot-cold activity 38 4.7. Gene Sequence Analysis 39 5. DISCUSSION 42 6. CONCLUSIONS 45 REFERENCES 46 CURRICULUM VITAE 59 tr_TR
dc.language.iso eng tr_TR
dc.rights info:eu-repo/semantics/openAccess tr_TR
dc.subject beta hemolizin,koagülaz negatif stafilokoklar,rekombinant gen,sfingomyelinaz,sitotoksin tr_TR
dc.title cloning of beta hemolysin gene from coagulase-negative staphylococci and testing of biological activity tr_TR
dc.title.alternative Koagulaz negatif stafilokoklardan beta hemolizin geninin klonlanması ve biyolojik aktivitesinin gösterilmesi tr_TR
dc.type masterThesis tr_TR
dc.contributor.authorID 0000-0003-2120-0469 tr_TR
dc.contributor.department ADNAN MENDERES ÜNİVERSİTESİ tr_TR


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